Package: phyloseqGraphTest
Title: Graph-Based Permutation Tests for Microbiome Data
Version: 0.1.1
Author: Julia Fukuyama [aut, cre]
Maintainer: Julia Fukuyama <julia.fukuyama@gmail.com>
Description: Provides functions for graph-based multiple-sample testing
        and visualization of microbiome data, in particular data stored
        in 'phyloseq' objects. The tests are based on those described
        in Friedman and Rafsky (1979)
        <http://www.jstor.org/stable/2958919>, and the tests are
        described in more detail in Callahan et al. (2016)
        <doi:10.12688/f1000research.8986.1>.
Imports: ggnetwork (>= 0.5.1), igraph (>= 1.1.2)
Depends: R (>= 3.5.0), ggplot2 (>= 2.2.1), phyloseq (>= 1.24.0)
License: CC0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: https://github.com/jfukuyama/phyloseqGraphTest
biocViews:
RoxygenNote: 7.2.3
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://jfukuyama.r-universe.dev
Date/Publication: 2024-02-05 18:27:28 UTC
RemoteUrl: https://github.com/jfukuyama/phyloseqgraphtest
RemoteRef: HEAD
RemoteSha: b12ebf799ae621af4d31a09b9b19410250a1cfda
NeedsCompilation: no
Packaged: 2026-09-23 07:02:05 UTC; root