Package: phyloseqGraphTest 0.1.1

phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.

Authors:Julia Fukuyama [aut, cre]

phyloseqGraphTest_0.1.1.tar.gz
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phyloseqGraphTest_0.1.1.tgz(r-4.4-any)phyloseqGraphTest_0.1.1.tgz(r-4.3-any)
phyloseqGraphTest_0.1.1.tar.gz(r-4.5-noble)phyloseqGraphTest_0.1.1.tar.gz(r-4.4-noble)
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phyloseqGraphTest.pdf |phyloseqGraphTest.html✨
phyloseqGraphTest/json (API)

Peer review:

Bug tracker:https://github.com/jfukuyama/phyloseqgraphtest/issues

On CRAN:

3 exports 4 stars 1.61 score 79 dependencies 2 mentions 12 scripts 555 downloads

Last updated 8 months agofrom:b12ebf799a. Checks:OK: 7. Indexed: yes.

Exports:graph_perm_testplot_permutationsplot_test_network

Dependencies:ade4apeaskpassBiobaseBiocGenericsbiomformatBiostringscliclustercodacodetoolscolorspacecpp11crayoncurldata.tabledigestfansifarverforeachGenomeInfoDbGenomeInfoDbDataggnetworkggplot2ggrepelgluegtablehttrigraphIRangesisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemulttestmunsellnetworknlmeopensslpermutephyloseqpillarpixmappkgconfigplyrR6RColorBrewerRcppRcppArmadilloreshape2rhdf5rhdf5filtersRhdf5librlangS4Vectorsscalessnaspstatnet.commonstringistringrsurvivalsystibbleUCSC.utilsutf8vctrsveganviridisLitewithrXVectorzlibbioc