Package: adaptiveGPCA 0.1.3

adaptiveGPCA: Adaptive Generalized PCA

Implements adaptive gPCA, as described in: Fukuyama, J. (2017) <arxiv:1702.00501>. The package also includes functionality for applying the method to 'phyloseq' objects so that the method can be easily applied to microbiome data and a 'shiny' app for interactive visualization.

Authors:Julia Fukuyama [aut, cre]

adaptiveGPCA_0.1.3.tar.gz
adaptiveGPCA_0.1.3.zip(r-4.5)adaptiveGPCA_0.1.3.zip(r-4.4)adaptiveGPCA_0.1.3.zip(r-4.3)
adaptiveGPCA_0.1.3.tgz(r-4.4-any)adaptiveGPCA_0.1.3.tgz(r-4.3-any)
adaptiveGPCA_0.1.3.tar.gz(r-4.5-noble)adaptiveGPCA_0.1.3.tar.gz(r-4.4-noble)
adaptiveGPCA_0.1.3.tgz(r-4.4-emscripten)adaptiveGPCA_0.1.3.tgz(r-4.3-emscripten)
adaptiveGPCA.pdf |adaptiveGPCA.html✨
adaptiveGPCA/json (API)

Peer review:

Bug tracker:https://github.com/jfukuyama/adaptivegpca/issues

On CRAN:

8 exports 9 stars 1.77 score 91 dependencies 2 mentions 24 scripts 469 downloads

Last updated 2 years agofrom:a93a3334e3. Checks:OK: 7. Indexed: yes.

Exports:adaptivegpcaestimateComponentsgpcagpcaFullFamilyinspectTaxonomyprocessPhyloseqvarianceOnEvecsvisualizeFullFamily

Dependencies:ade4apeaskpassbase64encBiobaseBiocGenericsbiomformatBiostringsbslibcachemcliclustercodetoolscolorspacecommonmarkcpp11crayoncurldata.tabledigestfansifarverfastmapfontawesomeforeachfsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehtmltoolshttpuvhttrigraphIRangesisobanditeratorsjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemulttestmunsellnlmeopensslpermutephyloseqpillarpixmappkgconfigplyrpromisesR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rhdf5rhdf5filtersRhdf5librlangS4VectorssassscalesshinysourcetoolsspstringistringrsurvivalsystibbleUCSC.utilsutf8vctrsveganviridisLitewithrxtableXVectorzlibbioc