Package: adaptiveGPCA 0.1.3

adaptiveGPCA: Adaptive Generalized PCA

Implements adaptive gPCA, as described in: Fukuyama, J. (2017) <arxiv:1702.00501>. The package also includes functionality for applying the method to 'phyloseq' objects so that the method can be easily applied to microbiome data and a 'shiny' app for interactive visualization.

Authors:Julia Fukuyama [aut, cre]

adaptiveGPCA_0.1.3.tar.gz
adaptiveGPCA_0.1.3.zip(r-4.7)adaptiveGPCA_0.1.3.zip(r-4.6)adaptiveGPCA_0.1.3.zip(r-4.5)
adaptiveGPCA_0.1.3.tgz(r-4.6-any)adaptiveGPCA_0.1.3.tgz(r-4.5-any)
adaptiveGPCA_0.1.3.tar.gz(r-4.7-any)adaptiveGPCA_0.1.3.tar.gz(r-4.6-any)
adaptiveGPCA_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
adaptiveGPCA/json (API)

# Install 'adaptiveGPCA' in R:
install.packages('adaptiveGPCA', repos = c('https://jfukuyama.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jfukuyama/adaptivegpca/issues

Datasets:

On CRAN:

Conda:

5.33 score 9 stars 24 scripts 275 downloads 2 mentions 8 exports 77 dependencies

Last updated from:a93a3334e3. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK226
source / vignettesOK232
linux-release-x86_64OK219
macos-release-arm64OK207
macos-oldrel-arm64OK324
windows-develOK187
windows-releaseOK154
windows-oldrelOK160
wasm-releaseOK118

Exports:adaptivegpcaestimateComponentsgpcagpcaFullFamilyinspectTaxonomyprocessPhyloseqvarianceOnEvecsvisualizeFullFamily

Dependencies:ade4apebase64encBiobaseBiocGenericsbiomformatBiostringsbslibcachemcliclustercodetoolscommonmarkcpp11crayondata.tabledigestfarverfastmapfontawesomeforeachfsgenericsggplot2gluegtablehtmltoolshttpuvigraphIRangesisobanditeratorsjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemulttestnlmeotelpermutephyloseqpixmappkgconfigplyrpromisesR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rlangS4VectorsS7sassscalesSeqinfoshinysourcetoolsspstringistringrsurvivalvctrsveganviridisLitewithrxtableXVector

adaptiveGPCA vignette

Julia Fukuyama

Rendered fromadaptive_gpca_vignette.Rmdusingknitr::rmarkdownon May 10 2026.

Last update: 2018-03-14
Started: 2016-06-29